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References

This page collects citations referenced in the legacy T-BAS manual.

Data standardization (PhyloXML)​

  • Han MV, Zmasek CM (2009) phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics 10:356.

De novo phylogenetic analysis​

  • Taylor JW et al. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31:21–32. doi:10.1006/fgbi.2000.1228
  • Zhang J et al. (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29:2869–2876. doi:10.1093/bioinformatics/btt499
How to cite T-BAS outputs

For publications, cite the specific reference tree accession used (when available) and include the platform release/version as appropriate.