Skip to main content

plotsv (Seqera deployment)

Upstream repository​

  • Source: ncsu-decifr/plotsv
  • Status: not maintained by ncsu-decifr; this page documents CIFR/Seqera deployment.

What this workflow does​

(Describe in 2–4 sentences: inputs → main steps → outputs.)

Seqera deployment​

  • Pipeline name in Seqera: (fill in)
  • Workspace / org: (fill in)
  • Launch preset / template: (fill in)
  • Default compute environment: (fill in)

Required inputs​

  • (e.g., samplesheet schema, FASTQ layout, reference resources, config)

Recommended profiles / configs​

  • Nextflow profile(s): (e.g., slurm, singularity, docker)
  • workDir: (location)
  • Resume policy: (e.g., always use -resume)

How to run (example)​

nextflow run ncsu-decifr/plotsv \
  -profile slurm \
  --input samplesheet.csv \
  --outdir results/

Outputs​

  • Key outputs:
    • (list)
  • Where CIFR users find results:
    • (paths, storage conventions)

Troubleshooting​

  • Common error: (symptom) → (fix)
  • Common error: (symptom) → (fix)