De novo single or multi-locus phylogenetic analysis

T-BAS includes a feature (under RAxML options) to infer a best tree for reference + unknown query sequences.

This can be useful for:

1. Species delimitation using the Genealogical Concordance Phylogenetic Species Recognition (GCPSR) concept
2. Generating an input tree for Poisson Tree Processes (PTP) species delimitation workflows

note

This feature is distinct from evolutionary placement: it infers a tree rather than placing queries onto an existing backbone.