T-BAS & DeCIFR Documentation

Welcome to the living documentation for T-BAS and DeCIFR, maintained by the Center for Integrated Fungal Research (CIFR), NC State.

This site is designed to be:

• Searchable (type-to-search)
• Indexed (clear left-hand navigation)
• Versionable (pin docs to software releases)
• Docs-as-code (easy to update via GitHub)

Looking for the old manual?

The legacy T-BAS v2.4 manual lives as a single HTML/PDF page. This site is the migrated, maintainable successor.

Quick links

• Start here: Quickstart
• T-BAS user guide: T-BAS overview
• DeCIFR overview: DeCIFR
• Tutorials: Tutorials
• Need help? Support

How to cite

Cite the T-BAS reference tree accession used in your analysis and the platform release when relevant. See: T-BAS references.