Scheduled maintenance window:
During this window, submissions and compute jobs may be paused and the site may be read‑only.
Phylogenetic & Network Methods
Tree inference, placement, and network analysis.
T-BAS Toolkit
Tree-Based Alignment Selector Toolkit.
Patristic Distance
Create patristic distance rings with DendroPy.
MAFFT
Align sequences with MAFFT.
RAxML & FastTree
Maximum likelihood tree inference.
IQ-TREE
Fast maximum likelihood tree inference.
BEAST
Bayesian phylogenetic tree inference.
Microsatellite Tree
Reconstruct tree from microsatellite data.
ASTRAL
Multispecies coalescent; PhyParts gene-tree conflict.
EPA-ng
Parallel, highly accurate ML phylogenetic placement.
Graph Inference
Create networks with TCS or upload graph file.
SplitsTree
Neighbor-Net splits network inference.
Mesquite Hypha
Display multiple node support values on trees.
